Niepa μBiointerface Lab

The physicochemical mechanisms that regulate microbial growth in various settings remain poorly understood for reasons linked not only to the versatility of the microorganisms but also to the challenge of designing new platforms to study or control them. The mission of the μBiointerface Lab is to develop translational-research programs that elucidate these mechanisms by designing sustainable control strategies for microbes relevant to health, industry, and the environment. Our research plan is to pursue three interrelated research thrusts to:

  • Eliminate pathogenic microbial communities (biofilms) associated with implantable devices using conductive substrate interfaces
  • Model pathogenic and beneficial microbial communities (microbiomes) in artificial microniches made of soft biomaterial
  • Control beneficial interfacial biofilms using surface-active compounds

Faculty

Tagbo Niepa

Tagbo H.R. Niepa

Arthur Hamerschlag Associate Professor, Chemical Engineering and Biomedical Engineering

Tagbo H.R. Niepa is the Arthur Hamerschlag Associate Professor of Chemical Engineering and Biomedical Engineering at Carnegie Mellon University. Niepa received his bachelor's degree in biomedical engineering from Syracuse University, after transferring from the University of Dortmund, Germany. He also received his Ph.D. in chemical engineering from Syracuse University. Niepa held a Postdoctoral Fellowship for Academic Diversity in the University of Pennsylvania's department of chemical and biomolecular engineering. Most recently, he served as an assistant professor of chemical and petroleum engineering at the University of Pittsburgh.

Niepa received the prestigious National Institutes of Health Director's New Innovator Award to support unconventional approaches to major challenges in biomedical and behavioral research. He also received a Faculty Early Career Development (CAREER) Award from the National Science Foundation (NSF) and a Rising Star of Mechanical Engineering Award from the American Society of Mechanical Engineers (ASME).

Office
3111 Doherty Hall
Email
tniepa@andrew.cmu.edu
Google Scholar
Tagbo H.R. Niepa
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Projects

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Research team

Amy Apgar

Amy Apgar

Doctorate

Research interests
Live biotherapeutic formulation and delivery using nanocultures, microfluidics, Clostridioides difficile infection, gnotobiotic animal studies, cultivation of Babesia microti
Email
aapgar@andrew.cmu.edu
Ann Badia

Ann Badia

Doctorate

Research interests
Bioprospection of human-derived probiotics, Matlab-based assessment of microbiome-dynamics, bacteria-surface interactions
Email
abadia@andrew.cmu.edu
Camila Cue

Camila Cue

Doctorate

Research interests
Electrochemical therapy for targeted treatments, developing new approaches to combat multidrug-resistant microorganisms, improving treatments for oral healthcare such as peri-implantitis
Email
ccue@andrew.cmu.edu
Anghea Dolisca

Anghea Dolisca

Doctorate

Co-Advisor
Mohammad Islam
Research interests
Smart bandages for infection control, microbe-surface interactions, electrochemical antimicrobial materials, and carbon nanotubes-based infection therapies
Email
adolisca@andrew.cmu.edu
Hannah Gedde

Hannah Gedde

Doctorate

Research interests
Biointerfacial phenomena of lung microbes, interfacial biofilm properties and dynamics
Email
hgedde@andrew.cmu.edu
Shakira Martinez Vasquez

Shakira Martinez Vasquez

Doctorate

Research interests
Interfacial and metabolic properties of skin microbes, rheological properties of interfacial biofilm, living materials at oil-water interfaces
Email
shakiram@andrew.cmu.edu
Abraham Polanco

Abraham Polanco

Doctorate

Co-Advisor
Rebecca Taylor
Research interests
Fabrication of DNA Origami as a mechanism to detect and eradicate multidrug resistant microorganisms
Email
apolanco@andrew.cmu.edu
Huda Usman

Huda Usman

Doctorate

Research interests
Developing nanoculture system to grow microbial dark matter, magnetic microbial housing, microfluidics, multispecies interactions in sessile drops
Email
husman@andrew.cmu.edu
Eesha Kulkarni

Eesha Kulkarni

Masters

Research interests
Machine learning, computer vision, and microfluidics
Email
eskulkar@andrew.cmu.edu
Abishek Venkataraman

Abishek Venkataraman

Masters

Research interests
Flow-focusing microfluidic devices, developing bacterial nanocultures, fusion of microfluidics and high-throughput imaging for investigation of drug-resistant pathogens
Email
abishekv@andrew.cmu.edu
Carly Austin

Carly Austin

Undergraduate

Research interests
Development of antimicrobial, photocatalytic membranes and surfaces to overcome multidrug-resistant microorganisms, aerogel and hydrogel technologies, and biotherapeutics
Email
caaustin@andrew.cmu.edu
Kaitlyn Bhalla

Kaitlyn Bhalla

Undergraduate

Research interests
Interfacial phenomena associated with ultra small microbes
Email
kbhalla2@andrew.cmu.edu
Harry Burton

Harry Burton

Undergraduate

Research interests
Understanding how bacterial biofilms form, adapt, and interact with their environments
Email
ahburton@andrew.cmu.edu
Naomi Dibong

Naomi Dibong

Undergraduate

Research interests
Bacteria-surface interactions, functional antimicrobial surfaces
Email
nid@andrew.cmu.edu
Crystal Echeverria

Crystal Echeverria

Undergraduate

Research interests
High-throughput imaging and computer-based analysis of species interactions
Email
crecheve@andrew.cmu.edu
Vaishnavi Harish

Vaishnavi Harish

Undergraduate

Research interests
Biotherapeutics, targeted drug delivery, microfluidics, development and analysis of bacterial nanocultures in different environments
Email
vaishnah@andrew.cmu.edu
Sreshta Kalisi

Sreshta Kalisi

Undergraduate

Research interests
Exploration of bacterial nanocultures and growth dynamics of bacteria in these cultures
Email
skalisi@andrew.cmu.edu
Audrey Lambert

Audrey Lambert

Undergraduate

Research interests
Microfluidics, cultivation of Babesia microti, optical imaging of red blood cell microcapsules, parasite-host cell interactions
Email
anlamber@andrew.cmu.edu
Riya Senthil

Riya Senthil

Undergraduate

Research interests
Oral microbiome, periodontal disease, microfluidics, drug delivery, 3D printing
Email
rsenthil@andrew.cmu.edu
Andrea Wang

Andrea Wang

Undergraduate

Research interests
Microfluidics, cultivating and understanding Babesia microti, comparing parasite-cell interactions across species
Email
arwang@andrew.cmu.edu
Michael Zheng

Michael Zheng

Undergraduate

Research interests
Multimodal feature extraction from microscopic imaging, deep-learning based data augmentation, and simulation of microbiome-dynamics
Email
michaelzheng@cmu.edu
Sara Aliyeva

Sara Aliyeva

Summer REU Scholar

Research interests
Oral microbial pathogens, biofilm dynamics, host–microbe interactions in the mouth, and oral microbiome-targeted therapies
Email
Sara.Aliyeva@tufts.edu

Past students

Undergraduates

  • Honora Armfield, 2025, Oakland University William Beaumont School of Medicine
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Research video

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Donate

The Niepa μBiointerface Lab is developing technologies to better study microbes. You can help us design new materials and new interfaces to combat drug-resistant infections, clean oil spills, and anticipate solutions for future problems.

Make a gift to the Niepa μBiointerface Lab

How your gift will be used:

  • Support students: Early research opportunities in the μBiointerface Lab inspire the next generation of engineers.
  • Support research: Target emerging pathogens for which there is no current treatment
  • Support international outreach: Build and broaden the pipeline of scientists

Every gift, no matter the size, helps. Our work would not be possible without the generous support of government funding agencies, foundations, companies, and donors like you.

Thank you!

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Publications

Refereed journal papers

  1. Li, C., Bache, E. G., Apgar, A. L., Tufts, D. M., Niepa, T.H.R. In Vitro Monitoring of Babesia microti Infection Dynamics in Whole Blood Microenvironments. Advanced Science (2025): e08185.
  2. Cué-Royo, C.S., Landis, C., Geraghty, M., Balmuri, S.R., Fridman, M., Niepa, T.H.R. Low-level direct currents eradicate multi-drug-resistant Candidozyma auris through physiological stress and antifungal permeation. Chemical Engineering Journal 520 (2025) 166070.
  3. Levin, D. S., Cué-Royo, C. S., Johnson, D. J., Gosh, S., Balmuri, S. R., Usman, H., Martínez Vásquez, S.M., Yedusoss, D.K., Djire, A., Mostafa, B., Niepa, T.H.R. Engineering an electroactive bacterial cellulose-carbon nanotube composite membrane against Staphylococcus aureus. Biofilm 10 (2025) 100305.
  4. Chauhan, R., Usman, H., Minocha, N., Molaei, M., Niepa, T.H.R., & Singh, M.R. Predictive modeling and experimental validation of magnetophoretic delivery of magnetic nanocultures. ACS Materials Letters (2025) 7, 2679−2685. DOI: 10.1021/acsmaterialslett.5c00753.
  5. Lee, G., Kim, J., Yang, J., Jang, Y., Jang, J., Tanaka, M., Niepa, T.H.R., Lee, H.Y., Choi, J. FOLR1-Targeted Oxygen-Delivering Nanosomes Enhance Chemo-Induced Apoptosis in Hypoxic Cancer. International Journal of Nanomedicine (2025) 20: 6875-6889.
  6. Park, J., Bae, T.H., Kim, S.Y., Park, S., Choi, Y., Tanaka, M., Kim, J., Jang, J., Yang, J., Lee, H.-Y., Niepa, T.H.R., Kang, S.H., Choi, J. Photocatalytic effect of gold-zinc oxide composite nanostructures for the selective and controlled killing of antibiotic-resistant bacteria and the removal of resistant bacterial biofilms from the body. Nano Convergence (2025) 12:23, 1-21.
  7. Li, X., Wosu, S.N., Trahan, K., Niepa, T.H.R. From Barriers to Bridges: The GEES Program's Impact on Low-Income Master's Students' Success and Professional Development. Collaborative Network for Engineering & Computing Diversity (CoNECD), February 2025, Paper ID 45237, 1-21.
  8. Ha, H., Choi, Y., Kim, N., Kim, J., Jang, J., Niepa, T.H.R., Tanaka, M., Lee, H., Choi, J. Lipid Nanoparticle Delivery System for Normalization of Tumor Microenvironment and Tumor Vascular Structure. Biomaterials Research (2025) 29: Article 0144. doi: 10.34133/bmr.0144.
  9. Kim, J., Enkhtaivan, K., Niepa, T.H.R., & Choi, J. How could emerging nanomedicine-based tuberculosis treatments outperform conventional approaches? Nanomedicine (2025) Jan 29:1-3. doi: 10.1080/17435889.2025.2458447.
  10. Siegel, H., de Ruiter, M., Niepa, T.H.R., & Haase, M.F. The effect of charge screening for cationic surfactants on the rigidity of interfacial nanoparticle assemblies. Journal of Colloid and Interface Science 678 (2025) 201–208. doi: 10.1016/j.jcis.2024.08.133.
  11. Badha, V.S., Niepa, T.H.R., Gharbi, M.A. Topological defects at smectic interfaces as a potential tool for the biosensing of living microorganisms. Langmuir (2024) 40, 22754−22761.
  12. Niepa, T.H.R., Locke, L.W., Corcoran, T.E., Lee, J.S. Editorial: Mechanobiology of biofilms and associated host-pathogen interactions. Frontiers in Cellular and Infection Microbiology (2024) 14:1416131. doi: 10.3389/fcimb.2024.1416131.
  13. Abd, G., Sánchez Díaz, Ra., Gupta, A., Niepa, T.H.R., Ramakrishna, S., Mondal, K., Sharma, A., Lantada, A. D., Islam, M. Carbon nanomaterials-based electrically conductive scaffolds for tissue engineering and regenerative medicine. MedComm - Biomaterials and Applications 3 (2), e76. (2024) doi: 10.1002/mba2.76.
  14. Balmuri, S.R., Noaman, S., Usman, H., Niepa, T.H.R. Altering the interfacial rheology of Pseudomonas aeruginosa and Staphylococcus aureus with N-acetyl cysteine and cysteamine. Frontiers in Cellular and Infection Microbiology (2024) 13, 1338477.
  15. Lieber, A., Hildebrandt, D., Davidson, S., Rivero, J., Usman, H., Niepa, T.H.R., Hornbostel, K. Demonstration of Direct Ocean Carbon Capture Using Encapsulated Solvents. (2023) Chemical Engineering Journal 470 (2023) 144140.
  16. Balmuri, S.R., Phandanouvong-Lozano, V., House, S.D., Yang, J.C., Niepa, T.H.R. Mucoid Switch Provides a Growth Advantage to Pseudomonas aeruginosa at Oil-Water Interfaces. ACS Applied Bio Materials 2022, 5, 5, 1868–1878. Early Career Forum – Invited Article. Featured cover art.
  17. Davidson, S-L & Niepa, T.H.R. Controlling Microbial Dynamics through Selective Solute Transport Across Functional Nanocultures. ACS Applied Polymer Materials 2022, 4, 5, 2999-3012. Early Career Forum – Invited Article. Featured cover art.
  18. Davidson, S-L & Niepa, T.H.R. Micro-technologies for Assessing Microbial Dynamics in Controlled Environments. Frontiers in Microbiology 12 (2022) 745835.
  19. Uzoukwu, E., Phandanouvong-Lozano, V., Usman, H., Sfeir, C.S., Niepa, T.H.R. Droplet-based microfluidics as a high-throughput method to investigate the human oral microbiome. Biotechnology Advances 55 (2022) 10790.
  20. Balmuri, S.R., Keck, N, Niepa, T.H.R. Assessing the performance of wax-based microsorbents for oil remediation. Colloids and Surfaces A: Physicochemical and Engineering Aspects 627 (2021) 127227.
  21. Usman, H., Davidson, S-L., Manimaran, N.H., Nguyen, J.T., Seth, R., Bah, A., Beckman, E., Niepa, T.H.R. Design of a Well-Defined Poly(Dimethylsiloxane)-Based Microbial Nanoculture System. Materials Today Communications 2021, 27, 102185.
  22. Coenye, T., Kjellerup, B., Stoodley, P., Bjarnsholt, T., the 2019 Biofilm Bash Participants (Niepa, T.H.R.). The future of biofilm research – Report on the '2019 Biofilm Bash'. Biofilm 2020, 2, 100012.
  23. Manimaran, N.H., Usman, H., Kamga, K., Davidson, S-L., Beckman, E., Niepa, T.H.R. Developing a Functional Poly(dimethylsiloxane)-Based Microbial Nanoculture System Using Dimethylallylamine. ACS Applied Materials & Interfaces 2020, 12, 45, 50581–50591. Featured cover art.
  24. Balmuri, S.R., Waters, N.G., Hegemann, J., Kierfeld, J., Niepa, T.H.R. Material Properties of Films of mucoid and non-mucoid Pseudomonas aeruginosa isolates. Acta Biomaterialia 118 (2020) 129–140.
  25. Parry-Nweye, E.*, Onukwugha, N.*, Balmuri, S.R., Shane, J.L., Kim, D., Koo, H., Niepa, T.H.R. Electrochemical Strategy for Eradicating Fluconazole-Tolerant Candida albicans using implantable Titanium. ACS Applied Materials & Interfaces 2019, 11, 40997−41008.
  26. Niepa, T.H.R.*, Vaccari L*, Leheny RL, Goulian M, Lee D, and Stebe KJ. Films of bacteria at Interfaces (FBI): Remodeling of fluid interfaces by Pseudomonas aeruginosa. Scientific Reports 7 (2017) 17864.
  27. Vaccari, L., Molaei, M., Niepa, T.H.R., Lee D#, Leheny LR, and Stebe KJ#. Films of Bacteria at Interfaces. Advances in Colloid and Interface Science 247 (2017) 561–572.
  28. Kim, D., Sengupta, A., Niepa, T.H.R., Lee, B.H., Weljie, A., Freitas-Blancos, V.S., Murata, R.M., Stebe, K.J.#, Lee, D.#, Koo, H. Candida albicans stimulates Streptococcus mutans microcolony development via cross-kingdom biofilm-derived metabolites. Scientific Reports 7 (2017) 41332.
  29. Niepa, T.H.R., Wang, H., Gilbert, J.L., and Ren, D#. Eradication of Pseudomonas aeruginosa cells by cathodic electrochemical currents delivered with graphite electrodes. Acta Biomaterialia 50 (2017) 344-352.
  30. Murphy, D., Gemmell, B., Vaccari, L., Li, C., Bacosa, H., Evans, M., Gemmell, C., Harvey, T., Jalali, M., Niepa, T.H.R. An in-depth survey of the oil spill literature since 1968: Long term trends and changes since Deepwater Horizon. Marine Pollution Bulletin 113 (1-2) (2016) 371–379.
  31. Hann, D.S., Niepa, T.H.R., Stebe, K.J.#, Lee, D.#. One-step generation of cell-viable compartments via polyelectrolyte complexation in an aqueous two-phase system. ACS Applied Materials & Interfaces 8 (38) (2016) 25603–25611.
  32. Niepa, T.H.R., Hou, L., Jiang, H., Goulian, M., Koo, H., Stebe, K.J.#, and Lee, D.#. Microbial Nanoculture as an Artificial Microniche. Scientific Reports 6 (2016) 30578.
  33. Niepa, T.H.R., Wang, H., Dabrowiak, J.C., Gilbert, J.L., Ren, D. Synergy between tobramycin and trivalent chromium ion in electrochemical control of Pseudomonas aeruginosa. Acta Biomaterialia 36 (2016) 286–295.
  34. Niepa, T.H.R., Snepenger, L.M., Wang, H., Sivan, S., Gilbert, J.L., Jones, M.B., Ren, D. Sensitizing Pseudomonas aeruginosa cells to antibiotics by electrochemical disruption of membrane functions. Biomaterials 74 (2016) 267-279.
  35. Niepa, T.H.R., Gilbert, J.L, and Ren, D#. Controlling Pseudomonas aeruginosa persister cells by weak electrochemical currents and synergistic effects with tobramycin. Biomaterials 33(30) (2012) 7356-7365.
  36. Szkotak, R., Niepa, T.H.R., Jawrani, N., Gilbert, J.L., Jones, M.B., Ren, D. Differential Gene Expression to Investigate the Effects of Low-level Electrochemical Currents on Bacillus subtilis. AMB Express 1 (2011) 39.

Refereed education conference papers (published)

  1. Hornbostel, K., Lieber, A., Riveroa, J., Hildebrandt, D., Snodgrass, C., Gamble, W., Neal, Z., Davidson, S., Usman, H., Niepa, T.H.R. Direct ocean carbon capture using membrane contactors (November 14, 2022). Proceedings of the 16th Greenhouse Gas Control Technologies Conference (GHGT-16) October 23-24, 2022.
  2. Yin, S., Wosu, S., Niepa, T.H.R., Trahan, K.W. Diversifying the Advanced Engineering Workforce: Why Low-Income Students Pursue Master's Degrees. 53rd Annual Conference of the Northeast Educational Research Association – October 19-21, 2022.
  3. Yin, S., Wosu, S., Niepa, T.H.R., Trahan, K.W. Graduate Engineering Education Scholarship: funding and supporting low-income students' advanced degrees for industry. 52nd Annual Meeting of the Northeastern Educational Research Association – Virtual Meeting October 13-15, 2021.
  4. House, S.D.*, Balmuri, S.R.*, Yang, J.C., Niepa, T.H.R. Investigating the Mucoid Switch of Pseudomonas aeruginosa at Oil-Water Interfaces. Proceedings of Microscopy & Microanalysis 25 (Suppl 2) 2019 1128.
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Patents and other intellectual properties

IP4.  Niepa, T.H.R., Davidson, S-L. (2020). Microcapsules and methods of using the same (U.S. Patent US11534408B2). This IP holds two inventions.

IP3.  Romo, L., Garritano, N., Niepa, T.H.R. (2013). Door Handle Sterilization System, WO Patent 2,013,025,894.

IP2.  Ren, D. #, Zhang M., Niepa, T.H.R., and Gilbert J. (2013). System and method for controlling bacterial cells with weak electric currents. (U.S. Patent 8,663,914).

IP1.  Ren, D. #, Zhang M., Niepa, T.H.R., and Gilbert J. (2014). System and method for controlling bacterial persister cells with weak electric currents. (U.S. Patent 8,569,027).

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Join our research lab

Are you looking to make a meaningful impact as a graduate or postdoctoral research fellow? Our lab focuses on cutting-edge research in three exciting areas:

  1. Microfluidics technology for high-throughput assessment of microorganisms: Explore innovative ways to integrate microfluidic chips with high-throughput imaging. Analyze large amounts of visual data at the single-cell level, advancing drug discovery, diagnostics, and personalized medicine.
  2. Interfacial rheology and mechanobiology of microorganisms: Dive into the fascinating world of biofilms. Investigate their properties, growth mechanisms, and impact on natural and built environments. Uncover the secrets of these microbial communities.
  3. Functional and antimicrobial materials: Work with materials that exhibit antibacterial and antiviral properties. Develop functional materials that inhibit microbial adherence through physicochemical factors.

Funding opportunities: We offer funding through federal grants and diversity supplements, providing a supportive environment for your research journey.

If you're excited about scientific exploration and want to contribute to groundbreaking discoveries, contact us! Submit your CV to tniepa@andrew.cmu.edu to discuss this exciting opportunity.

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Media mentions

Dolisca wins National GEM Consortium poster award

BME Ph.D. student Anghea Dolisca won 1st place in the Technical Poster Session at the National GEM Consortium 2025 Annual Conference. Dolisca, who works with ChemE/BME's Tagbo Niepa, presented "When Quantum Materials Meet Reality: Surviving the Harsh World of Applications."

Chemical Engineering

Cracking the shell to unlock new frontiers in microbiome research

Tagbo Niepa engineered microcapsule shells that can rupture on-demand, releasing the microbes cultivated inside.

CMU Engineering

Electric shocks power-off drug-resistant yeast

Electrochemical therapy makes currently-available drugs more effective against yeast infections that the CDC classifies as an urgent threat.

CMU Engineering

A dialogue on digital humanism in Africa

Led by globally recognized experts, participants at the first-ever Summer School on Digital Humanism at CMU-Africa teamed up to discuss issues at the intersection of technology and humanity in the African context.

CMU Engineering

Microfluidic platform for monitoring parasite spread by ticks

As cases of babesiosis increase, scientists now have a better way to study how the parasite is transmitted and how it infects red blood cells over time.

Martinez Vasquez selected as GEM Employer Fellow

ChemE Ph.D. student Shakira Martinez Vasquez was selected as a 2025 GEM Employer Fellow, sponsored by EMD Serono and Carnegie Mellon University. Martinez Vasquez works with ChemE/BME's Tagbo Niepa.

CMU Engineering

Engineering students named CMLH Fellows

Carnegie Mellon’s Center for Machine Learning and Health (CMLH) has named two biomedical engineering Ph.D. students as 2024 Generative AI in Healthcare Fellows and a mechanical engineering student a 2024 Digital Health Innovation Fellow.

Usman wins Three Minute Thesis People’s Choice Award

ChemE Ph.D. student Huda Usman won the People’s Choice Award, as well as 3rd place overall, at the Carnegie Mellon Three Minute Thesis 2025 championship. Usman, who works with ChemE/BME’s Tagbo Niepa, presented “Culturing the Unculturable: A New Frontier in Antibiotic Research.”

Niepa appointed to USNC/IUPAC

ChemE/BME's Tagbo Niepa was appointed by the National Academies of Sciences, Engineering, and Medicine as Member of the U.S. National Committee for the International Union of Pure and Applied Chemistry.

Usman wins Three Minute Thesis preliminary

ChemE Ph.D. student Huda Usman was co-winner of preliminary round 4 in the Carnegie Mellon Three Minute Thesis competition. Usman, who works with ChemE/BME’s Tagbo Niepa, presented “Culturing the Unculturable: A New Frontier in Antibiotic Research.”

Chemical Engineering

CMU Rales Fellows Harness Unique Perspectives To Drive Innovation

Chemical engineering Ph.D. student Abraham Polanco is part of the inaugural cohort of CMU Rales Fellows.

Center for Machine Learning and Health

Badia named Generative AI in Healthcare Fellow

BME Ph.D. student Ann Badia was selected as a 2024 Generative AI in Healthcare Fellow with the Center for Machine Learning and Health in Carnegie Mellon’s School of Computer Science. Badia works with ChemE/BME’s Tagbo Niepa.

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